Ah I see. The issue is Not with the way the Universe is setup, instead it is the way CR works when Universe is the datasource.
When you Universe as a datasource, there is No way you can pass the Record Selection Formula to the database server. In this situation, you should create a filter condition in the Universe.
You can then drag that condition in the 'Filter Pane' on the Query Panel in CR.
-Abhilash